HL_7SYT_022

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

AUUCCCAU

Length

8 nucleotides

Bulged bases

7SYT|1|2|U|1114, 7SYT|1|2|U|1115

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYT|1|2|A|1113
7SYT|1|2|U|1114
7SYT|1|2|U|1115
7SYT|1|2|C|1116
7SYT|1|2|C|1117
7SYT|1|2|C|1118
7SYT|1|2|A|1119
7SYT|1|2|U|1120

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain c

eS27

Chain z

Internal ribosome entry site; IRES