HL_7SYT_025
3D structure
- PDB id
- 7SYT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 7SYT|1|2|A|1253
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SYT_025 not in the Motif Atlas
- Geometric match to HL_4WF9_011
- Geometric discrepancy: 0.149
- The information below is about HL_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
7SYT|1|2|G|1245
7SYT|1|2|A|1246
7SYT|1|2|C|1247
7SYT|1|2|U|1248
7SYT|1|2|C|1249
7SYT|1|2|A|1250
7SYT|1|2|A|1251
7SYT|1|2|C|1252
7SYT|1|2|A|1253
7SYT|1|2|C|1254
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain R
- uS9
- Chain V
- uS10
- Chain e
- eS29
- Chain i
- Transfer RNA; tRNA
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