HL_7SYT_035
3D structure
- PDB id
- 7SYT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- GGUGAACC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SYT_035 not in the Motif Atlas
- Geometric match to HL_4WF9_053
- Geometric discrepancy: 0.3894
- The information below is about HL_4WF9_053
- Detailed Annotation
- GNRA with extra cWW
- Broad Annotation
- GNRA with extra cWW
- Motif group
- HL_45359.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
7SYT|1|2|G|1846
7SYT|1|2|G|1847
7SYT|1|2|U|1848
7SYT|1|2|G|1849
7SYT|1|2|A|1850
7SYT|1|2|A|1851
7SYT|1|2|C|1852
7SYT|1|2|C|1853
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain P
- uS11
- Chain n
- 60s ribosomal protein l41
Coloring options: