HL_7SYT_046

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

ACUGCCUGAU

Length

10 nucleotides

Bulged bases

7SYT|1|z|U|290, 7SYT|1|z|G|295, 7SYT|1|z|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYT|1|z|A|288
7SYT|1|z|C|289
7SYT|1|z|U|290
7SYT|1|z|G|291
7SYT|1|z|C|292
7SYT|1|z|C|293
7SYT|1|z|U|294
7SYT|1|z|G|295
7SYT|1|z|A|296
7SYT|1|z|U|297

Current chains

Chain z

HCV IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain C

eS1