HL_7SYU_010

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7SYU|1|2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYU_010 not in the Motif Atlas

Geometric match to HL_5Y85_004

Geometric discrepancy: 0.1222

The information below is about HL_5Y85_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

7SYU|1|2|C|462
7SYU|1|2|C|463
7SYU|1|2|A|464
7SYU|1|2|A|465
7SYU|1|2|G|466
7SYU|1|2|G|467

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6