HL_7SYU_015

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAGCGGCCGUCC

Length

12 nucleotides

Bulged bases

7SYU|1|2|G|697

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYU|1|2|G|692
7SYU|1|2|A|693
7SYU|1|2|G|694
7SYU|1|2|C|695
7SYU|1|2|G|696
7SYU|1|2|G|697
7SYU|1|2|C|729
7SYU|1|2|C|730
7SYU|1|2|G|731
7SYU|1|2|U|732
7SYU|1|2|C|733
7SYU|1|2|C|734

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S7

Chain X

uS8