HL_7SYU_018

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

7SYU|1|2|U|888, 7SYU|1|2|U|892

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYU|1|2|C|884
7SYU|1|2|U|885
7SYU|1|2|A|886
7SYU|1|2|U|887
7SYU|1|2|U|888
7SYU|1|2|U|889
7SYU|1|2|U|890
7SYU|1|2|G|891
7SYU|1|2|U|892
7SYU|1|2|U|893
7SYU|1|2|G|894
7SYU|1|2|G|895
7SYU|1|2|U|896
7SYU|1|2|U|897
7SYU|1|2|U|898
7SYU|1|2|U|899
7SYU|1|2|C|900
7SYU|1|2|G|901
7SYU|1|2|G|902

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain M

uS17