HL_7SYU_037
3D structure
- PDB id
- 7SYU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GCCCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 7SYU|1|i|C|32
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SYU_037 not in the Motif Atlas
- Geometric match to HL_4WF9_011
- Geometric discrepancy: 0.1098
- The information below is about HL_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
7SYU|1|i|G|30
7SYU|1|i|C|31
7SYU|1|i|C|32
7SYU|1|i|C|33
7SYU|1|i|A|34
7SYU|1|i|U|35
7SYU|1|i|A|36
7SYU|1|i|A|37
7SYU|1|i|C|38
Current chains
- Chain i
- Met-tRNA-i-Met
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain R
- uS9
- Chain z
- Internal ribosome entry site; IRES
Coloring options: