HL_7SYU_047

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYU_047 not in the Motif Atlas

Homologous match to HL_8CRE_225

Geometric discrepancy: 0.3441

The information below is about HL_8CRE_225

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7SYU|1|2|G|1847
7SYU|1|2|U|1848
7SYU|1|2|G|1849
7SYU|1|2|A|1850
7SYU|1|2|A|1851
7SYU|1|2|C|1852

Current chains

Chain 2

18S rRNA

Nearby chains

Chain n

60s ribosomal protein l41