HL_7SYW_003

3D structure

PDB id

7SYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

7SYW|1|2|U|160, 7SYW|1|2|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYW_003 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2858

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7SYW|1|2|G|156
7SYW|1|2|U|157
7SYW|1|2|A|158
7SYW|1|2|A|159
7SYW|1|2|U|160
7SYW|1|2|U|161
7SYW|1|2|C|162

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

40S ribosomal protein S24