HL_7SYW_007

3D structure

PDB id

7SYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYW_007 not in the Motif Atlas

Geometric match to HL_6JXM_001

Geometric discrepancy: 0.3516

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

7SYW|1|2|G|377
7SYW|1|2|U|378
7SYW|1|2|C|379
7SYW|1|2|G|380
7SYW|1|2|C|381
7SYW|1|2|C|382
7SYW|1|2|G|383
7SYW|1|2|U|384
7SYW|1|2|G|385
7SYW|1|2|C|386
7SYW|1|2|C|387

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8

Chain M

uS17