HL_7SYW_010

3D structure

PDB id

7SYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7SYW|1|2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYW_010 not in the Motif Atlas

Geometric match to HL_5J7L_030

Geometric discrepancy: 0.1449

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7SYW|1|2|C|462
7SYW|1|2|C|463
7SYW|1|2|A|464
7SYW|1|2|A|465
7SYW|1|2|G|466
7SYW|1|2|G|467

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain x

Eukaryotic translation initiation factor 5B