HL_7SYW_018

3D structure

PDB id

7SYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

7SYW|1|2|U|888, 7SYW|1|2|G|891, 7SYW|1|2|U|892

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYW|1|2|C|884
7SYW|1|2|U|885
7SYW|1|2|A|886
7SYW|1|2|U|887
7SYW|1|2|U|888
7SYW|1|2|U|889
7SYW|1|2|U|890
7SYW|1|2|G|891
7SYW|1|2|U|892
7SYW|1|2|U|893
7SYW|1|2|G|894
7SYW|1|2|G|895
7SYW|1|2|U|896
7SYW|1|2|U|897
7SYW|1|2|U|898
7SYW|1|2|U|899
7SYW|1|2|C|900
7SYW|1|2|G|901
7SYW|1|2|G|902

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain M

uS17