HL_7SYW_037
3D structure
- PDB id
- 7SYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCCCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SYW_037 not in the Motif Atlas
- Geometric match to HL_4TUE_034
- Geometric discrepancy: 0.1153
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
7SYW|1|i|G|30
7SYW|1|i|C|31
7SYW|1|i|C|32
7SYW|1|i|C|33
7SYW|1|i|A|34
7SYW|1|i|U|35
7SYW|1|i|A|36
7SYW|1|i|A|37
7SYW|1|i|C|38
Current chains
- Chain i
- Met-tRNA-i-Met
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- Eukaryotic translation initiation factor 1A, X-chromosomal
- Chain R
- uS9
- Chain z
- Internal ribosome entry site; IRES
Coloring options: