HL_7SYX_010

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7SYX|1|2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYX_010 not in the Motif Atlas

Geometric match to HL_5Y85_004

Geometric discrepancy: 0.1052

The information below is about HL_5Y85_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

7SYX|1|2|C|462
7SYX|1|2|C|463
7SYX|1|2|A|464
7SYX|1|2|A|465
7SYX|1|2|G|466
7SYX|1|2|G|467

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain x

Eukaryotic translation initiation factor 5B