HL_7SYX_013

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYX_013 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.2042

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7SYX|1|2|A|569
7SYX|1|2|C|570
7SYX|1|2|U|571
7SYX|1|2|U|572
7SYX|1|2|U|573
7SYX|1|2|A|574
7SYX|1|2|A|575
7SYX|1|2|A|576
7SYX|1|2|U|577
7SYX|1|2|C|578
7SYX|1|2|C|579
7SYX|1|2|U|580
7SYX|1|2|U|581

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Z

40S ribosomal protein S24