HL_7SYX_018

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

7SYX|1|2|U|887, 7SYX|1|2|U|888, 7SYX|1|2|G|891

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYX|1|2|C|884
7SYX|1|2|U|885
7SYX|1|2|A|886
7SYX|1|2|U|887
7SYX|1|2|U|888
7SYX|1|2|U|889
7SYX|1|2|U|890
7SYX|1|2|G|891
7SYX|1|2|U|892
7SYX|1|2|U|893
7SYX|1|2|G|894
7SYX|1|2|G|895
7SYX|1|2|U|896
7SYX|1|2|U|897
7SYX|1|2|U|898
7SYX|1|2|U|899
7SYX|1|2|C|900
7SYX|1|2|G|901
7SYX|1|2|G|902

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain M

uS17