HL_7SYX_026

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7SYX|1|2|U|1300, 7SYX|1|2|G|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYX|1|2|A|1295
7SYX|1|2|U|1296
7SYX|1|2|U|1297
7SYX|1|2|G|1298
7SYX|1|2|A|1299
7SYX|1|2|U|1300
7SYX|1|2|A|1301
7SYX|1|2|G|1302
7SYX|1|2|C|1303
7SYX|1|2|U|1304

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

uS19

Chain e

eS29

Chain g

40S ribosomal protein S27a