HL_7SYX_038

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYX_038 not in the Motif Atlas

Geometric match to HL_3AM1_004

Geometric discrepancy: 0.3046

The information below is about HL_3AM1_004

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

7SYX|1|i|G|52
7SYX|1|i|A|53
7SYX|1|i|U|54
7SYX|1|i|C|55
7SYX|1|i|G|56
7SYX|1|i|A|57
7SYX|1|i|A|58
7SYX|1|i|A|59
7SYX|1|i|C|60

Current chains

Chain i

Met-tRNA-i-Met

Nearby chains