HL_7SYX_042

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGUUGGGUCGC

Length

12 nucleotides

Bulged bases

7SYX|1|z|U|264, 7SYX|1|z|U|269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYX|1|z|G|261
7SYX|1|z|U|262
7SYX|1|z|G|263
7SYX|1|z|U|264
7SYX|1|z|U|265
7SYX|1|z|G|266
7SYX|1|z|G|267
7SYX|1|z|G|268
7SYX|1|z|U|269
7SYX|1|z|C|270
7SYX|1|z|G|271
7SYX|1|z|C|272

Current chains

Chain z

HCV IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain C

eS1

Chain c

eS27