HL_7SYX_048

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACUGCCUGAU

Length

10 nucleotides

Bulged bases

7SYX|1|z|U|290, 7SYX|1|z|G|295, 7SYX|1|z|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYX|1|z|A|288
7SYX|1|z|C|289
7SYX|1|z|U|290
7SYX|1|z|G|291
7SYX|1|z|C|292
7SYX|1|z|C|293
7SYX|1|z|U|294
7SYX|1|z|G|295
7SYX|1|z|A|296
7SYX|1|z|U|297

Current chains

Chain z

HCV IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain C

eS1