HL_7TM3_004
3D structure
- PDB id
- 7TM3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.25 Å
Loop
- Sequence
- CGCGGCG
- Length
- 7 nucleotides
- Bulged bases
- 7TM3|1|K|G|134, 7TM3|1|K|G|135
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TM3_004 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.3104
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27483.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7TM3|1|K|C|131
7TM3|1|K|G|132
7TM3|1|K|C|133
7TM3|1|K|G|134
7TM3|1|K|G|135
7TM3|1|K|C|136
7TM3|1|K|G|137
Current chains
- Chain K
- 28S ribosomal RNA
Nearby chains
- Chain N
- Ribosomal protein L15
- Chain h
- eL35
- Chain j
- Ribosomal protein L37
- Chain v
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: