HL_7TM3_005

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

7TM3|1|K|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TM3_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.3182

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7TM3|1|K|U|204
7TM3|1|K|C|205
7TM3|1|K|U|206
7TM3|1|K|G|207
7TM3|1|K|A|208
7TM3|1|K|U|209
7TM3|1|K|C|210
7TM3|1|K|G|211

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain Y

uL24

Chain e

eL32