HL_7TM3_011
3D structure
- PDB id
- 7TM3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.25 Å
Loop
- Sequence
- UGAAGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TM3_011 not in the Motif Atlas
- Homologous match to HL_8C3A_011
- Geometric discrepancy: 0.127
- The information below is about HL_8C3A_011
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
7TM3|1|K|U|393
7TM3|1|K|G|394
7TM3|1|K|A|395
7TM3|1|K|A|396
7TM3|1|K|G|397
7TM3|1|K|A|398
Current chains
- Chain K
- 28S ribosomal RNA
Nearby chains
- Chain 4
- Coiled-coil domain containing 47
- Chain P
- uL22
Coloring options: