HL_7TM3_012
3D structure
- PDB id
- 7TM3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.25 Å
Loop
- Sequence
- UCCCGUCG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TM3_012 not in the Motif Atlas
- Geometric match to HL_4V9K_033
- Geometric discrepancy: 0.295
- The information below is about HL_4V9K_033
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_48417.6
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 22
Unit IDs
7TM3|1|K|U|520
7TM3|1|K|C|521
7TM3|1|K|C|522
7TM3|1|K|C|523
7TM3|1|K|G|638
7TM3|1|K|U|639
7TM3|1|K|C|640
7TM3|1|K|G|641
Current chains
- Chain K
- 28S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L13
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