3D structure

PDB id
7TM3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.25 Å

Loop

Sequence
UCCCGUCG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7TM3_012 not in the Motif Atlas
Geometric match to HL_4V9K_033
Geometric discrepancy: 0.295
The information below is about HL_4V9K_033
Detailed Annotation
tRNA D-loop
Broad Annotation
No text annotation
Motif group
HL_48417.6
Basepair signature
cWW-F-F
Number of instances in this motif group
22

Unit IDs

7TM3|1|K|U|520
7TM3|1|K|C|521
7TM3|1|K|C|522
7TM3|1|K|C|523
7TM3|1|K|G|638
7TM3|1|K|U|639
7TM3|1|K|C|640
7TM3|1|K|G|641

Current chains

Chain K
28S ribosomal RNA

Nearby chains

Chain L
60S ribosomal protein L13

Coloring options:


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