HL_7TM3_012

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

UCCCGUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TM3_012 not in the Motif Atlas

Geometric match to HL_4V9K_033

Geometric discrepancy: 0.295

The information below is about HL_4V9K_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

7TM3|1|K|U|520
7TM3|1|K|C|521
7TM3|1|K|C|522
7TM3|1|K|C|523
7TM3|1|K|G|638
7TM3|1|K|U|639
7TM3|1|K|C|640
7TM3|1|K|G|641

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13