HL_7TM3_031

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

GGUGGCCAUGGAAGUCGGAAUCC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TM3|1|K|G|1972
7TM3|1|K|G|1973
7TM3|1|K|U|1974
7TM3|1|K|G|1975
7TM3|1|K|G|1976
7TM3|1|K|C|1977
7TM3|1|K|C|1978
7TM3|1|K|A|1979
7TM3|1|K|U|1980
7TM3|1|K|G|1981
7TM3|1|K|G|1982
7TM3|1|K|A|1983
7TM3|1|K|A|1984
7TM3|1|K|G|1985
7TM3|1|K|U|1986
7TM3|1|K|C|1987
7TM3|1|K|G|1988
7TM3|1|K|G|1989
7TM3|1|K|A|1990
7TM3|1|K|A|1991
7TM3|1|K|U|1992
7TM3|1|K|C|1993
7TM3|1|K|C|1994

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L10