3D structure

PDB id
7TM3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.25 Å

Loop

Sequence
CAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACG
Length
40 nucleotides
Bulged bases
7TM3|1|K|C|2094, 7TM3|1|K|A|2104, 7TM3|1|K|A|2105, 7TM3|1|K|U|2267, 7TM3|1|K|C|2269
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7TM3|1|K|C|2087
7TM3|1|K|A|2088
7TM3|1|K|G|2089
7TM3|1|K|U|2090
7TM3|1|K|C|2091
7TM3|1|K|G|2092
7TM3|1|K|G|2093
7TM3|1|K|C|2094
7TM3|1|K|A|2095
7TM3|1|K|G|2096
7TM3|1|K|A|2097
7TM3|1|K|G|2098
7TM3|1|K|C|2099
7TM3|1|K|G|2100
7TM3|1|K|A|2101
7TM3|1|K|G|2102
7TM3|1|K|A|2103
7TM3|1|K|A|2104
7TM3|1|K|A|2105
7TM3|1|K|G|2106
7TM3|1|K|A|2107
7TM3|1|K|G|2108
7TM3|1|K|A|2109
7TM3|1|K|G|2110
7TM3|1|K|U|2111
7TM3|1|K|G|2112
7TM3|1|K|G|2113
7TM3|1|K|C|2258
7TM3|1|K|G|2259
7TM3|1|K|C|2260
7TM3|1|K|G|2261
7TM3|1|K|G|2262
7TM3|1|K|A|2263
7TM3|1|K|C|2264
7TM3|1|K|G|2265
7TM3|1|K|C|2266
7TM3|1|K|U|2267
7TM3|1|K|A|2268
7TM3|1|K|C|2269
7TM3|1|K|G|2270

Current chains

Chain K
28S ribosomal RNA

Nearby chains

Chain C
60S ribosomal protein L4
Chain E
60S ribosomal protein L6
Chain F
60S ribosomal protein L7
Chain Q
eL18
Chain b
eL29
Chain r
eL28

Coloring options:

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