HL_7TM3_036

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TM3_036 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.1662

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7TM3|1|K|C|2458
7TM3|1|K|G|2459
7TM3|1|K|A|2460
7TM3|1|K|G|2461
7TM3|1|K|C|2462
7TM3|1|K|G|2463

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37