HL_7TM3_043

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TM3_043 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1598

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7TM3|1|K|G|2705
7TM3|1|K|G|2706
7TM3|1|K|U|2707
7TM3|1|K|U|2708
7TM3|1|K|C|2709
7TM3|1|K|C|2710

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain 1

Protein transport protein Sec61 subunit alpha isoform 1

Chain R

Ribosomal protein L19