HL_7TM3_051

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

7TM3|1|K|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TM3_051 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.2173

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7TM3|1|K|C|3668
7TM3|1|K|G|3669
7TM3|1|K|C|3670
7TM3|1|K|G|3671
7TM3|1|K|G|3672
7TM3|1|K|C|3673
7TM3|1|K|G|3674

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain G

60S ribosomal protein L7a

Chain N

Ribosomal protein L15