HL_7TM3_055

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7TM3|1|K|A|3876, 7TM3|1|K|A|3877, 7TM3|1|K|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TM3_055 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0622

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7TM3|1|K|G|3873
7TM3|1|K|G|3874
7TM3|1|K|G|3875
7TM3|1|K|A|3876
7TM3|1|K|A|3877
7TM3|1|K|C|3878
7TM3|1|K|G|3879
7TM3|1|K|G|3880
7TM3|1|K|G|3881
7TM3|1|K|C|3882

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain e

eL32

Chain w

uL3