HL_7TM3_057

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7TM3|1|K|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TM3_057 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1132

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7TM3|1|K|C|4193
7TM3|1|K|U|4194
7TM3|1|K|G|4195
7TM3|1|K|G|4196
7TM3|1|K|G|4197
7TM3|1|K|G|4198
7TM3|1|K|C|4199
7TM3|1|K|G|4200
7TM3|1|K|G|4201

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain b

eL29

Chain q

Transfer RNA; tRNA