HL_7TM3_070

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7TM3|1|K|G|4694, 7TM3|1|K|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TM3_070 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0681

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7TM3|1|K|C|4688
7TM3|1|K|U|4689
7TM3|1|K|G|4690
7TM3|1|K|A|4691
7TM3|1|K|A|4692
7TM3|1|K|C|4693
7TM3|1|K|G|4694
7TM3|1|K|C|4695
7TM3|1|K|C|4696
7TM3|1|K|U|4697
7TM3|1|K|C|4698
7TM3|1|K|U|4699
7TM3|1|K|A|4700
7TM3|1|K|A|4701
7TM3|1|K|G|4702

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

uL13

Chain m

eL40