HL_7TM3_072

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

7TM3|1|K|A|4910, 7TM3|1|K|A|4911, 7TM3|1|K|G|4914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TM3_072 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.3101

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

7TM3|1|K|C|4906
7TM3|1|K|G|4907
7TM3|1|K|G|4908
7TM3|1|K|A|4909
7TM3|1|K|A|4910
7TM3|1|K|A|4911
7TM3|1|K|G|4912
7TM3|1|K|G|4913
7TM3|1|K|G|4914
7TM3|1|K|G|4915

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain O

uL13

Chain w

uL3