HL_7TM3_075

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

GUAGCGGUUAUC

Length

12 nucleotides

Bulged bases

7TM3|1|q|C|16, 7TM3|1|q|U|20|||A

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TM3_075 not in the Motif Atlas

Homologous match to HL_4JYZ_001

Geometric discrepancy: 0.3511

The information below is about HL_4JYZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.4

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

7TM3|1|q|G|12
7TM3|1|q|U|13
7TM3|1|q|A|14
7TM3|1|q|G|15
7TM3|1|q|C|16
7TM3|1|q|G|18
7TM3|1|q|G|19
7TM3|1|q|U|20
7TM3|1|q|U|20|||A
7TM3|1|q|A|21
7TM3|1|q|U|22
7TM3|1|q|C|23

Current chains

Chain q

P-site tRNA

Nearby chains

Chain J

60S ribosomal protein L11

Chain K

Large subunit ribosomal RNA; LSU rRNA

Chain o

eL42