HL_7TM3_082

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TM3_082 not in the Motif Atlas

Homologous match to HL_8C3A_076

Geometric discrepancy: 0.2084

The information below is about HL_8C3A_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

7TM3|1|v|C|107
7TM3|1|v|A|108
7TM3|1|v|C|109
7TM3|1|v|U|110
7TM3|1|v|U|111
7TM3|1|v|G|112

Current chains

Chain v

5.8S ribosomal RNA

Nearby chains

Chain K

Large subunit ribosomal RNA; LSU rRNA

Chain X

eL23

Chain j

Ribosomal protein L37

Chain l

eL39