HL_7TM3_083

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

7TM3|1|v|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TM3|1|v|G|121
7TM3|1|v|G|122
7TM3|1|v|U|123
7TM3|1|v|U|124
7TM3|1|v|C|125
7TM3|1|v|C|126
7TM3|1|v|U|127
7TM3|1|v|C|128
7TM3|1|v|C|129

Current chains

Chain v

5.8S ribosomal RNA

Nearby chains

Chain K

Large subunit ribosomal RNA; LSU rRNA

Chain X

eL23