HL_7TM3_084

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

UACGAAA

Length

7 nucleotides

Bulged bases

7TM3|1|K|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TM3|1|K|U|1364
7TM3|1|K|A|1368
7TM3|1|K|C|1369
7TM3|1|K|G|1370
7TM3|1|K|A|1371
7TM3|1|K|A|1372
7TM3|1|K|A|1373

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15

Chain Y

uL24

Chain v

5.8S ribosomal RNA; 5.8S rRNA