HL_7TOO_010

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOO_010 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.0786

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7TOO|1|A25S|A|357
7TOO|1|A25S|G|358
7TOO|1|A25S|U|359
7TOO|1|A25S|G|360
7TOO|1|A25S|A|361
7TOO|1|A25S|U|362

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL04

RPL4A isoform 1

Chain AL37

60S ribosomal protein L37-A

Chain AL39

60S ribosomal protein L39