HL_7TOO_011

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOO_011 not in the Motif Atlas

Homologous match to HL_8C3A_011

Geometric discrepancy: 0.0968

The information below is about HL_8C3A_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7TOO|1|A25S|U|382
7TOO|1|A25S|G|383
7TOO|1|A25S|A|384
7TOO|1|A25S|A|385
7TOO|1|A25S|A|386
7TOO|1|A25S|A|387

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL17

60S ribosomal protein L17-A