HL_7TOO_035

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

7TOO|1|A25S|U|1606, 7TOO|1|A25S|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOO_035 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.1292

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7TOO|1|A25S|G|1599
7TOO|1|A25S|U|1600
7TOO|1|A25S|U|1601
7TOO|1|A25S|A|1602
7TOO|1|A25S|A|1603
7TOO|1|A25S|G|1604
7TOO|1|A25S|A|1605
7TOO|1|A25S|U|1606
7TOO|1|A25S|U|1607
7TOO|1|A25S|C|1608

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19-A

Chain AL25

60S ribosomal protein L25

Chain AL34

60S ribosomal protein L34-A