HL_7TOO_047

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

7TOO|1|A25S|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOO_047 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.1021

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7TOO|1|A25S|A|2164
7TOO|1|A25S|G|2165
7TOO|1|A25S|A|2166
7TOO|1|A25S|A|2167
7TOO|1|A25S|A|2168
7TOO|1|A25S|G|2169
7TOO|1|A25S|U|2170

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L2-A

Chain AL08

60S ribosomal protein L8-A

Chain AL15

60S ribosomal protein L15-A