3D structure

PDB id
7TOO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
AACAGAAAU
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7TOO_057 not in the Motif Atlas
Homologous match to HL_8C3A_057
Geometric discrepancy: 0.1329
The information below is about HL_8C3A_057
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_72777.1
Basepair signature
cWW-F-cWH-F-F-F-F
Number of instances in this motif group
6

Unit IDs

7TOO|1|A25S|A|2673
7TOO|1|A25S|A|2674
7TOO|1|A25S|C|2675
7TOO|1|A25S|A|2676
7TOO|1|A25S|G|2677
7TOO|1|A25S|A|2678
7TOO|1|A25S|A|2679
7TOO|1|A25S|A|2680
7TOO|1|A25S|U|2681

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain AL11
RPL11A isoform 1

Coloring options:


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