HL_7TOO_068

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7TOO|1|A25S|G|3116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOO_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0823

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7TOO|1|A25S|C|3110
7TOO|1|A25S|U|3111
7TOO|1|A25S|G|3112
7TOO|1|A25S|A|3113
7TOO|1|A25S|A|3114
7TOO|1|A25S|C|3115
7TOO|1|A25S|G|3116
7TOO|1|A25S|C|3117
7TOO|1|A25S|C|3118
7TOO|1|A25S|U|3119
7TOO|1|A25S|C|3120
7TOO|1|A25S|U|3121
7TOO|1|A25S|A|3122
7TOO|1|A25S|A|3123
7TOO|1|A25S|G|3124

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL09

60S ribosomal protein L9-A

Chain AL16

60S ribosomal protein L16-A

Chain AL40

Ubiquitin-60S ribosomal protein L40