HL_7TOO_075

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

7TOO|1|A58S|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOO_075 not in the Motif Atlas

Geometric match to HL_5TBW_076

Geometric discrepancy: 0.1516

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7TOO|1|A58S|G|124
7TOO|1|A58S|U|125
7TOO|1|A58S|A|126
7TOO|1|A58S|U|127
7TOO|1|A58S|U|128
7TOO|1|A58S|C|129

Current chains

Chain A58S

5.8S rRNA

Nearby chains

Chain A25S

Large subunit ribosomal RNA; LSU rRNA

Chain AL25

60S ribosomal protein L25