HL_7TOP_009
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GGUAAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 7TOP|1|A25S|G|304, 7TOP|1|A25S|U|305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TOP_009 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.0934
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
7TOP|1|A25S|G|303
7TOP|1|A25S|G|304
7TOP|1|A25S|U|305
7TOP|1|A25S|A|306
7TOP|1|A25S|A|307
7TOP|1|A25S|A|308
7TOP|1|A25S|U|309
7TOP|1|A25S|U|310
7TOP|1|A25S|C|311
7TOP|1|A25S|C|312
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL15
- 60S ribosomal protein L15-A
- Chain AL28
- 60S ribosomal protein L28
- Chain AL36
- 60S ribosomal protein L36-A
- Chain AL42
- 60S ribosomal protein L42-A
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