HL_7TOP_010
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AGUGAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TOP_010 not in the Motif Atlas
- Homologous match to HL_8C3A_010
- Geometric discrepancy: 0.0703
- The information below is about HL_8C3A_010
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
7TOP|1|A25S|A|357
7TOP|1|A25S|G|358
7TOP|1|A25S|U|359
7TOP|1|A25S|G|360
7TOP|1|A25S|A|361
7TOP|1|A25S|U|362
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL04
- RPL4A isoform 1
- Chain AL37
- 60S ribosomal protein L37-A
- Chain AL39
- 60S ribosomal protein L39
- Chain PR
- PR20
Coloring options: