HL_7TOP_034

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCCUGAUUUUAUGCAGGC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOP|1|A25S|G|1561
7TOP|1|A25S|C|1562
7TOP|1|A25S|C|1563
7TOP|1|A25S|U|1564
7TOP|1|A25S|G|1565
7TOP|1|A25S|A|1566
7TOP|1|A25S|U|1567
7TOP|1|A25S|U|1568
7TOP|1|A25S|U|1569
7TOP|1|A25S|U|1570
7TOP|1|A25S|A|1571
7TOP|1|A25S|U|1572
7TOP|1|A25S|G|1573
7TOP|1|A25S|C|1574
7TOP|1|A25S|A|1575
7TOP|1|A25S|G|1576
7TOP|1|A25S|G|1577
7TOP|1|A25S|C|1578

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain A58S

5.8S ribosomal RNA; 5.8S rRNA

Chain AL02

60S ribosomal protein L2-A

Chain AL08

60S ribosomal protein L8-A

Chain AL25

60S ribosomal protein L25