3D structure

PDB id
7TOP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GGUAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7TOP_036 not in the Motif Atlas
Homologous match to HL_8C3A_036
Geometric discrepancy: 0.0782
The information below is about HL_8C3A_036
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

7TOP|1|A25S|G|1634
7TOP|1|A25S|G|1635
7TOP|1|A25S|U|1636
7TOP|1|A25S|A|1637
7TOP|1|A25S|A|1638
7TOP|1|A25S|C|1639

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain AL27
60S ribosomal protein L27-A
Chain AL34
60S ribosomal protein L34-A

Coloring options:


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