HL_7TOP_037

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

7TOP|1|A25S|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_037 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1167

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7TOP|1|A25S|G|1680
7TOP|1|A25S|U|1681
7TOP|1|A25S|U|1682
7TOP|1|A25S|A|1683
7TOP|1|A25S|U|1684
7TOP|1|A25S|C|1685
7TOP|1|A25S|U|1686
7TOP|1|A25S|U|1687
7TOP|1|A25S|U|1688

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19-A

Chain AL22

60S ribosomal protein L22-A